TSS: Rfmm 100038.1: Difference between revisions
From referenceTSS
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|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:1341817 | |hgnc_mgi_id=MGI:1341817 | ||
|methods=CAGE{{!}}TSS_database{{!}}CAGE_and_CAGEscan | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NM_010195.2 | |nearest_promoter_id=NM_010195.2 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914 | |||
|species=mouse | |species=mouse | ||
|start=115423645 | |start=115423645 | ||
Revision as of 20:17, 21 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2342091,EM10E0964639) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 26 |
|---|---|
| Nearest PromoterID: | NM_010195.2 |
| Entrez ID: | Lgr5 |
| Nearest Unigene: | NM_010195 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Lgr5 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.035714 |
| GC%: | 0.620690 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.