TSS: Rfmm 102276.1: Difference between revisions

Revision as of 20:54, 21 December 2023

Basic information about the TSS

TSS ID:	rfmm_102276.1
Species:	mouse
Chr:	chr11

Start:	11686222
End:	11686222
Strand:	+

Source datasets

DRA000914

Protocol

CAGE_and_CAGEscan

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	dELS (EM10D1204618,EM10E0494988)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Ikzf1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	46045
Nearest PromoterID:	NM_001301866.1
Entrez ID:	Ikzf1
Nearest Unigene:	NM_001301863
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Ikzf1
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=
+|methods=CAGE_and_CAGEscan
 |nearest_ensembl=
 |nearest_promoter_id=NM_001301866.1
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=DRA000914
 |species=mouse
 |start=11686222