TSS: Rfmm 107222.1: Difference between revisions

Revision as of 22:15, 21 December 2023

Basic information about the TSS

TSS ID:	rfmm_107222.1
Species:	mouse
Chr:	chr11

Start:	72026815
End:	72026835
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D1238503,EM10E0508770)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001024927.2:100 NM_001081641.1:100
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Pitpnm3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-110
Nearest PromoterID:	NM_001081641.1
Entrez ID:	Pitpnm3
Nearest Unigene:	XR_388480
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Pitpnm3
Gene Alias:
Gene Type:
CpG%:	0.050000
GC%:	0.571429
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=
 |nearest_promoter_id=NM_001081641.1
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=mouse
 |start=72026815