TSS: Rfmm 108732.1: Difference between revisions
From referenceTSS
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|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:2144254 | |hgnc_mgi_id=MGI:2144254 | ||
|methods=CAGE_and_CAGEscan{{!}}C1CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_015519.1 | |nearest_promoter_id=NR_015519.1 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=DRA000914{{!}}PRJDB10397 | |||
|species=mouse | |species=mouse | ||
|start=83114388 | |start=83114388 | ||
| Line 32: | Line 34: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000145461.8 ENSMUST00000216842.2 ENSMUST00000143673.2 AK028715 AK168001 | |transcript_name=ENSMUST00000145461.8 ENSMUST00000216842.2 ENSMUST00000143673.2 AK028715 AK168001 | ||
|tss_cluster_detected= | |tss_cluster_detected=2 | ||
|tss_id=rfmm_108732.1 | |tss_id=rfmm_108732.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 22:39, 21 December 2023
Basic information about the TSS
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| Source datasets | DRA000914|PRJDB10397 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE_and_CAGEscan|C1CAGE | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS (EM10D1246552,EM10E0512867) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NR_015519.1 |
| Entrez ID: | AI662270 |
| Nearest Unigene: | NR_015519 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | AI662270 |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.076923 |
| GC%: | 0.600000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.