TSS: Rfmm 108733.1: Difference between revisions
From referenceTSS
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|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:2144254 MGI:3651774 | |hgnc_mgi_id=MGI:2144254 MGI:3651774 | ||
|methods=CAGE{{!}}CAGE_and_CAGEscan | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_015519.1 | |nearest_promoter_id=NR_015519.1 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}DRA000914 | |||
|species=mouse | |species=mouse | ||
|start=83115219 | |start=83115219 | ||
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|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000216233.2 ENSMUST00000214346.2 AK136560 AK079892 AK079857 | |transcript_name=ENSMUST00000216233.2 ENSMUST00000214346.2 AK136560 AK079892 AK079857 | ||
|tss_cluster_detected=2 | |||
|tss_id=rfmm_108733.1 | |tss_id=rfmm_108733.1 | ||
|tss_id_v3=mm_97880.1 | |tss_id_v3=mm_97880.1 |
Latest revision as of 22:39, 21 December 2023
Basic information about the TSS
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Source datasets | FANTOM5|DRA000914 | |||||||||||||||
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Protocol | CAGE|CAGE_and_CAGEscan | |||||||||||||||
TSS cluster detected* | 2 |
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
Description: | PLS,CTCF-bound (EM10D1246554,EM10E0512869) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 866 |
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Nearest PromoterID: | NR_015519.1 |
Entrez ID: | AI662270 |
Nearest Unigene: | NR_015519 |
Nearest Refseq: | |
Nearest Ensembl: | |
Gene Name: | AI662270 |
Gene Alias: | |
Gene Description: | |
Gene Type: | |
CpG%: | 0.020408 |
GC%: | 0.464646 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.