TSS: Rfmm 115441.1: Difference between revisions

Revision as of 00:31, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_115441.1
TSS ID(Version3):	mm_107118.1
Species:	mouse
Chr:	chr12

Start:	18564467
End:	18564521
Strand:	+

Source datasets

FANTOM5|EPD|GSE117655|DRA000914

Protocol

CAGE|TSS_database|deepCAGE|CAGE_and_CAGEscan

TSS cluster detected^*

4

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D1284615,EM10E0532298)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000177778.9:0 AK017753:0
GeneID:	236366
HGNC/MGI_ID:	MGI:1917882
UniProt_ID:	J3QPX0
Nearer transcript ids and distances:

Gene_name:	5730507C01Rik
Gene_symbol:	5730507C01Rik
Gene_synonyms:
Gene_source:	MGI:1917882

TATA-Box annotation

Distance to TSS:	-17
Nearest PromoterID:	NM_001033157.4
Entrez ID:	5730507C01Rik
Nearest Unigene:	XM_011243861
Nearest Refseq:
Nearest Ensembl:
Gene Name:	5730507C01Rik
Gene Alias:
Gene Type:
CpG%:	0.092593
GC%:	0.654545
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:1917882
+|methods=CAGE{{!}}TSS_database{{!}}deepCAGE{{!}}CAGE_and_CAGEscan
 |nearest_ensembl=
 |nearest_promoter_id=NM_001033157.4
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}GSE117655{{!}}DRA000914
 |species=mouse
 |start=18564467