TSS: Rfmm 1301.1: Difference between revisions
From referenceTSS
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|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3781822 | |hgnc_mgi_id=MGI:3781822 | ||
|methods=CAGE{{!}}TSS_database | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NM_001177348.1 | |nearest_promoter_id=NM_001177348.1 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD | |||
|species=mouse | |species=mouse | ||
|start=39844472 | |start=39844472 | ||
Latest revision as of 04:27, 22 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2269265,EM10E0934695) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001177348.1 |
| Entrez ID: | Gm3646 |
| Nearest Unigene: | NM_001177348 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Gm3646 |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.411765 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.