TSS: Rfmm 130291.1: Difference between revisions

Revision as of 04:30, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_130291.1
Species:	mouse
Chr:	chr14

Start:	53607471
End:	53607482
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	pELS (EM10D2470363,EM10E1019128)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	U07878:29
GeneID:	634322
HGNC/MGI_ID:	MGI:3822547
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Trav14n-3
Gene_symbol:	Trav14d-3-dv8
Gene_synonyms:
Gene_source:	MGI:3822547

TATA-Box annotation

Distance to TSS:	-58
Nearest PromoterID:	id-Trav14n-3
Entrez ID:	Trav14n-3
Nearest Unigene:	id-Trav14n-3
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Trav14n-3
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:3822547
+|methods=CAGE
 |nearest_ensembl=
 |nearest_promoter_id=id-Trav14n-3
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=mouse
 |start=53607471