TSS: Rfmm 131198.1: Difference between revisions

Revision as of 04:45, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_131198.1
Species:	mouse
Chr:	chr14

Start:	57983502
End:	57983601
Strand:	-

Source datasets

GSE117655|DRA000914

Protocol

deepCAGE|CAGE_and_CAGEscan

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2472120,EM10E1020039)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000174694.8:0 ENSMUST00000022531.14:0 ENSMUST00000174213.8:0 ENSMUST00000173990.8:0 AK029242:0 BC053028:0 AK164789:0 AK029870:0 AK081190:0 AK029966:0 AK163607:0 BC024819:0 KY442318:0
GeneID:	50523
HGNC/MGI_ID:	MGI:1354386 MGI:6121571
UniProt_ID:	G3UXG3 G3UY78 G3UZ29 Q7TSJ6
Nearer transcript ids and distances:

Gene_name:	Lats2
Gene_symbol:	Gm49361 Lats2
Gene_synonyms:
Gene_source:	MGI:1354386 MGI:6121571

TATA-Box annotation

Distance to TSS:	-3
Nearest PromoterID:	XM_006519225.4
Entrez ID:	Lats2
Nearest Unigene:	NM_153382
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Lats2
Gene Alias:
Gene Type:
CpG%:	0.131313
GC%:	0.660000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:1354386 MGI:6121571
+|methods=deepCAGE{{!}}CAGE_and_CAGEscan
 |nearest_ensembl=
 |nearest_promoter_id=XM_006519225.4
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=GSE117655{{!}}DRA000914
 |species=mouse
 |start=57983502
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENSMUST00000174694.8 ENSMUST00000022531.14 ENSMUST00000174213.8 ENSMUST00000173990.8 AK029242 BC053028 AK164789 AK029870 AK081190 AK029966 AK163607 BC024819 KY442318
-|tss_cluster_detected=4
+|tss_cluster_detected=2
 |tss_id=rfmm_131198.1
 |tss_score=1
 |uniprot_id=G3UXG3 G3UY78 G3UZ29 Q7TSJ6
 }}