TSS: Rfmm 133952.1: Difference between revisions
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|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:107373 | |hgnc_mgi_id=MGI:107373 | ||
|methods=C1CAGE{{!}}deepCAGE{{!}}CAGE_and_CAGEscan | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NM_008929.3 | |nearest_promoter_id=NM_008929.3 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJDB10397{{!}}GSE117655{{!}}DRA000914 | |||
|species=mouse | |species=mouse | ||
|start=119175338 | |start=119175338 | ||
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|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000022734.9 AK146097 AK148270 BC013766 U28423 | |transcript_name=ENSMUST00000022734.9 AK146097 AK148270 BC013766 U28423 | ||
|tss_cluster_detected= | |tss_cluster_detected=3 | ||
|tss_id=rfmm_133952.1 | |tss_id=rfmm_133952.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q3UFV9 Q3UKA1 | |uniprot_id=Q3UFV9 Q3UKA1 | ||
}} | }} |
Latest revision as of 05:29, 22 December 2023
Basic information about the TSS
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Source datasets | PRJDB10397|GSE117655|DRA000914 | |||||||||||||
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Protocol | C1CAGE|deepCAGE|CAGE_and_CAGEscan | |||||||||||||
TSS cluster detected* | 3 |
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
Description: | PLS,CTCF-bound (EM10D2485901,EM10E1024715) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 27 |
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Nearest PromoterID: | NM_008929.3 |
Entrez ID: | Dnajc3 |
Nearest Unigene: | NM_008929 |
Nearest Refseq: | |
Nearest Ensembl: | |
Gene Name: | Dnajc3 |
Gene Alias: | |
Gene Description: | |
Gene Type: | |
CpG%: | 0.181818 |
GC%: | 0.776119 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.