TSS: Rfmm 149573.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
Line 21: Line 21:
|gene_type=
|gene_type=
|hgnc_mgi_id=MGI:1929069 MGI:5547779
|hgnc_mgi_id=MGI:1929069 MGI:5547779
|methods=CAGE{{!}}TSS_database{{!}}deepCAGE{{!}}CAGE_and_CAGEscan{{!}}C1CAGE
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=NM_021419.2
|nearest_promoter_id=NM_021419.2
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5{{!}}EPD{{!}}GSE117655{{!}}DRA000914{{!}}PRJDB10397
|species=mouse
|species=mouse
|start=29833761
|start=29833761
Line 32: Line 34:
|tata_box=
|tata_box=
|transcript_name=ENSMUST00000024817.15 ENSMUST00000162588.3 ENSMUST00000172485.8 ENSMUST00000234498.2 ENSMUST00000130871.2 ENSMUST00000161952.2 AK147168 BC021778 AK076180 AK172991
|transcript_name=ENSMUST00000024817.15 ENSMUST00000162588.3 ENSMUST00000172485.8 ENSMUST00000234498.2 ENSMUST00000130871.2 ENSMUST00000161952.2 AK147168 BC021778 AK076180 AK172991
|tss_cluster_detected=5
|tss_id=rfmm_149573.1
|tss_id=rfmm_149573.1
|tss_id_v3=mm_137788.1;mm_137787.1;mm_137789.1
|tss_id_v3=mm_137788.1;mm_137787.1;mm_137789.1

Revision as of 09:46, 22 December 2023

Basic information about the TSS


TSS ID:rfmm_149573.1
TSS ID(Version3):mm_137788.1
mm_137787.1
mm_137789.1
Species:mouse
Chr:chr17
Start:29833761
End:29833902
Strand:+
Source datasetsFANTOM5|EPD|GSE117655|DRA000914|PRJDB10397
ProtocolCAGE|TSS_database|deepCAGE|CAGE_and_CAGEscan|C1CAGE
TSS cluster detected*5

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS,CTCF-bound (EM10D2554396,EM10E1053265)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENSMUST00000024817.15:0
ENSMUST00000162588.3:0
ENSMUST00000172485.8:0
ENSMUST00000234498.2:0
ENSMUST00000130871.2:0
ENSMUST00000161952.2:0
AK147168:0
BC021778:0
AK076180:0
AK172991:0
GeneID:106014251 58230
HGNC/MGI_ID:MGI:1929069 MGI:5547779
UniProt_ID:A0A3Q4EGU3 E0CXC2 E0CY08 G3UZZ4 Q6A027 Q8VC56
Nearer transcript ids and distances:
    Gene_name:Rnf8
    Gene_symbol:Gm28043 Rnf8
    Gene_synonyms:3830404E21Rik AIP37
    Gene_source:MGI:1929069 MGI:5547779



    TATA-Box annotation


    Distance to TSS:68
    Nearest PromoterID:NM_021419.2
    Entrez ID:Rnf8
    Nearest Unigene:NM_021419
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Rnf8
    Gene Alias:
    Gene Type:
    CpG%:0.113475
    GC%:0.669014
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.