TSS: Rfmm 149573.1: Difference between revisions
From referenceTSS
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|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:1929069 MGI:5547779 | |hgnc_mgi_id=MGI:1929069 MGI:5547779 | ||
|methods=CAGE{{!}}TSS_database{{!}}deepCAGE{{!}}CAGE_and_CAGEscan{{!}}C1CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NM_021419.2 | |nearest_promoter_id=NM_021419.2 | ||
Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}GSE117655{{!}}DRA000914{{!}}PRJDB10397 | |||
|species=mouse | |species=mouse | ||
|start=29833761 | |start=29833761 | ||
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|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000024817.15 ENSMUST00000162588.3 ENSMUST00000172485.8 ENSMUST00000234498.2 ENSMUST00000130871.2 ENSMUST00000161952.2 AK147168 BC021778 AK076180 AK172991 | |transcript_name=ENSMUST00000024817.15 ENSMUST00000162588.3 ENSMUST00000172485.8 ENSMUST00000234498.2 ENSMUST00000130871.2 ENSMUST00000161952.2 AK147168 BC021778 AK076180 AK172991 | ||
|tss_cluster_detected=5 | |||
|tss_id=rfmm_149573.1 | |tss_id=rfmm_149573.1 | ||
|tss_id_v3=mm_137788.1;mm_137787.1;mm_137789.1 | |tss_id_v3=mm_137788.1;mm_137787.1;mm_137789.1 |
Revision as of 09:46, 22 December 2023
Basic information about the TSS
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Source datasets | FANTOM5|EPD|GSE117655|DRA000914|PRJDB10397 | |||||||||||||||
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Protocol | CAGE|TSS_database|deepCAGE|CAGE_and_CAGEscan|C1CAGE | |||||||||||||||
TSS cluster detected* | 5 |
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
Description: | PLS,CTCF-bound (EM10D2554396,EM10E1053265) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 68 |
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Nearest PromoterID: | NM_021419.2 |
Entrez ID: | Rnf8 |
Nearest Unigene: | NM_021419 |
Nearest Refseq: | |
Nearest Ensembl: | |
Gene Name: | Rnf8 |
Gene Alias: | |
Gene Type: | |
CpG%: | 0.113475 |
GC%: | 0.669014 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.