TSS: Rfmm 15704.1: Difference between revisions

Revision as of 11:49, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_15704.1
Species:	mouse
Chr:	chr2

Start:	70392457
End:	70392467
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D2642845,EM10E1090314)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001312900.1:6 NM_008077.5:6
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Gad1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-11
Nearest PromoterID:	NM_008077.5
Entrez ID:	Gad1
Nearest Unigene:	XM_006498766
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Gad1
Gene Alias:
Gene Type:
CpG%:	0.100000
GC%:	0.727273
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=
 |nearest_promoter_id=NM_008077.5
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=mouse
 |start=70392457