TSS: Rfmm 159965.1: Difference between revisions

Revision as of 12:38, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_159965.1
TSS ID(Version3):	mm_146301.1
Species:	mouse
Chr:	chr18

Start:	80250387
End:	80250481
Strand:	+

Source datasets

FANTOM5|PRJDB10397

Protocol

CAGE|C1CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D2597790,EM10E1071101)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000153363.3:0 AK187706:0 AK187751:0 AK189069:0 AK198184:0 AK218707:0 AK181260:0 AK189366:0 AK184254:0
GeneID:	117903916 27366
HGNC/MGI_ID:	MGI:1351613 MGI:3833940
UniProt_ID:	Q9CQX6
Nearer transcript ids and distances:

Gene_name:	Txnl4a
Gene_symbol:	Naa12 Txnl4a
Gene_synonyms:	D18Wsu98e ENSMUSG00000057130 Gm16286 Txnl4 U5-15kDa
Gene_source:	MGI:1351613 MGI:3833940

TATA-Box annotation

Distance to TSS:	393
Nearest PromoterID:	NR_168913.1
Entrez ID:	Txnl4a
Nearest Unigene:	NM_001042408
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Txnl4a
Gene Alias:
Gene Type:
CpG%:	0.095745
GC%:	0.631579
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:1351613 MGI:3833940
+|methods=CAGE{{!}}C1CAGE
 |nearest_ensembl=
 |nearest_promoter_id=NR_168913.1
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJDB10397
 |species=mouse
 |start=80250387
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENSMUST00000153363.3 AK187706 AK187751 AK189069 AK198184 AK218707 AK181260 AK189366 AK184254
-|tss_cluster_detected=0
+|tss_cluster_detected=2
 |tss_id=rfmm_159965.1
 |tss_id_v3=mm_146301.1