TSS: Rfmm 20450.1: Difference between revisions

Revision as of 16:51, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_20450.1
Species:	mouse
Chr:	chr2

Start:	143704854
End:	143704870
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2663997,EM10E1098549)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000099296.4:0 AB003147:0 AK143180:0 AK053766:0
GeneID:	12075
HGNC/MGI_ID:	MGI:101770
UniProt_ID:	A2AMT1
Nearer transcript ids and distances:

Gene_name:	Bfsp1
Gene_symbol:	Bfsp1
Gene_synonyms:	filensin
Gene_source:	MGI:101770

TATA-Box annotation

Distance to TSS:	231
Nearest PromoterID:	NM_009751.2
Entrez ID:	Bfsp1
Nearest Unigene:	XM_011239266
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Bfsp1
Gene Alias:
Gene Type:
CpG%:	0.187500
GC%:	0.823529
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:101770
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=
 |nearest_promoter_id=NM_009751.2
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=mouse
 |start=143704854