TSS: Rfmm 24697.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
Line 21: Line 21:
|gene_type=
|gene_type=
|hgnc_mgi_id=MGI:3780136
|hgnc_mgi_id=MGI:3780136
|methods=CAGE{{!}}TSS_database
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=NM_001076679.2
|nearest_promoter_id=NM_001076679.2
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5{{!}}EPD
|species=mouse
|species=mouse
|start=15397326
|start=15397326

Revision as of 18:00, 22 December 2023

Basic information about the TSS

TSS ID:rfmm_24697.1
Species:mouse
Chr:chr3
Start:15397326
End:15397342
Strand:-
Source datasetsFANTOM5|EPD
ProtocolCAGE|TSS_database
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000108361.2:-20
DQ055452:-20
GeneID:751864
HGNC/MGI_ID:MGI:3780136
UniProt_ID:Q1AN91
Nearer transcript ids and distances:
    Gene_name:Gm9733
    Gene_symbol:Sirpd
    Gene_synonyms:Gm9733
    Gene_source:MGI:3780136



    TATA-Box annotation

    Distance to TSS:28
    Nearest PromoterID:NM_001076679.2
    Entrez ID:Gm9733
    Nearest Unigene:XM_006530092
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Gm9733
    Gene Alias:
    Gene Type:
    CpG%:0.000000
    GC%:0.529412
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
    Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfmm_24697.1&oldid=3072009"