TSS: Hg 10533.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=-16 |entrez_id=79363 |gc_percent=0.736318 |gene_alias=C1orf89 |gene_description=REM2 and RAB like small GTPase 1 |gene_name=RSG1...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000375599.7:0 NM_030907:0 uc001ayd.4:0 BC002946:196 BC008702:196 CU678308:404 HQ447419:404 KJ899535:404 ENST00000434014.1:488 uc057cqw.1:488 | |||
|chr=chr1 | |||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=0 | |||
|distance_to_tss=-16 | |distance_to_tss=-16 | ||
|end=16237214 | |||
|entrez_id=79363 | |entrez_id=79363 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
|gene_alias=C1orf89 | |gene_alias=C1orf89 | ||
|gene_description=REM2 and RAB like small GTPase 1 | |gene_description=REM2 and RAB like small GTPase 1 | ||
|gene_name=RSG1 | |gene_id=79363 | ||
|gene_name=REM2 and RAB like small GTPase 1 | |||
|gene_source=HGNC:28127 | |||
|gene_symbol=RSG1 | |||
|gene_synonyms=MGC10731 | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:28127 | |||
|nearest_ensembl=ENSG00000132881 | |nearest_ensembl=ENSG00000132881 | ||
|nearest_promoter_id=NM_030907 | |nearest_promoter_id=NM_030907 | ||
|nearest_refseq=NM_030907 | |nearest_refseq=NM_030907 | ||
|nearest_unigene=Hs.546430 | |nearest_unigene=Hs.546430 | ||
|num_trans=10 | |||
|species=human | |||
|start=16237146 | |||
|strand=- | |||
|tata_box="76(GGCGTTTAAAGG,-,0.00),77(GCGTTTAAAGGG,-,0.00)" | |tata_box="76(GGCGTTTAAAGG,-,0.00),77(GCGTTTAAAGGG,-,0.00)" | ||
|transcript_name=ENST00000375599.7 NM_030907 uc001ayd.4 | |||
|tss_classification=yes | |||
|tss_id=hg_10533.1 | |tss_id=hg_10533.1 | ||
|tss_score=1 | |||
|uniprot_id=Q9BU20 | |||
}} | }} | ||
Revision as of 21:31, 8 March 2018
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -16 |
|---|---|
| Nearest PromoterID: | NM_030907 |
| Entrez ID: | 79363 |
| Nearest Unigene: | Hs.546430 |
| Nearest Refseq: | NM_030907 |
| Nearest Ensembl: | ENSG00000132881 |
| Gene Name: | REM2 and RAB like small GTPase 1 |
| Gene Alias: | C1orf89 |
| Gene Description: | REM2 and RAB like small GTPase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "76(GGCGTTTAAAGG,-,0.00),77(GCGTTTAAAGGG,-,0.00)" |
TSS expression
Expression data not found.