TSS: Rfmm 27568.1: Difference between revisions

Revision as of 18:46, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_27568.1
Species:	mouse
Chr:	chr3

Start:	87524849
End:	87524920
Strand:	+

Source datasets

GSE117655|DRA000914

Protocol

deepCAGE|CAGE_and_CAGEscan

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D1789307,EM10E0734605)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000136072.8:0 ENSMUST00000039476.15:0 ENSMUST00000129113.8:0 ENSMUST00000142799.2:0 AK171406:0 AK157225:0 AK165441:0
GeneID:	213498
HGNC/MGI_ID:	MGI:2441869
UniProt_ID:	E9Q0A3 Q3U048 Q68FM7
Nearer transcript ids and distances:

Gene_name:	Arhgef11
Gene_symbol:	Arhgef11
Gene_synonyms:	PDZ-RhoGEF Prg
Gene_source:	MGI:2441869

TATA-Box annotation

Distance to TSS:	18
Nearest PromoterID:	NM_001003912.2
Entrez ID:	Arhgef11
Nearest Unigene:	XR_004941301
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Arhgef11
Gene Alias:
Gene Type:
CpG%:	0.183099
GC%:	0.847222
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:2441869
+|methods=deepCAGE{{!}}CAGE_and_CAGEscan
 |nearest_ensembl=
 |nearest_promoter_id=NM_001003912.2
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=GSE117655{{!}}DRA000914
 |species=mouse
 |start=87524849
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENSMUST00000136072.8 ENSMUST00000039476.15 ENSMUST00000129113.8 ENSMUST00000142799.2 AK171406 AK157225 AK165441
-|tss_cluster_detected=5
+|tss_cluster_detected=2
 |tss_id=rfmm_27568.1
 |tss_score=1
 |uniprot_id=E9Q0A3 Q3U048 Q68FM7
 }}