TSS: Rfmm 29356.1: Difference between revisions

Revision as of 19:16, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_29356.1
Species:	mouse
Chr:	chr3

Start:	97517473
End:	97517538
Strand:	-

Source datasets

PRJDB10397|GSE117655|DRA000914

Protocol

C1CAGE|deepCAGE|CAGE_and_CAGEscan

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2702306,EM10E1114439)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000029730.5:0 ENSMUST00000197304.2:0 BC052385:0 BC057567:0 BC062966:0 AK014473:0 AK165656:0 BC019617:0 AK011061:0
GeneID:	68058
HGNC/MGI_ID:	MGI:1915308
UniProt_ID:	Q9CRZ3 Q9CXF7
Nearer transcript ids and distances:

Gene_name:	Chd1l
Gene_symbol:	Chd1l
Gene_synonyms:	4432404A22Rik Snf2p
Gene_source:	MGI:1915308

TATA-Box annotation

Distance to TSS:	1
Nearest PromoterID:	NM_026539.2
Entrez ID:	Chd1l
Nearest Unigene:	NM_026539
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Chd1l
Gene Alias:
Gene Type:
CpG%:	0.184615
GC%:	0.742424
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:1915308
+|methods=C1CAGE{{!}}deepCAGE{{!}}CAGE_and_CAGEscan
 |nearest_ensembl=
 |nearest_promoter_id=NM_026539.2
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJDB10397{{!}}GSE117655{{!}}DRA000914
 |species=mouse
 |start=97517473
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENSMUST00000029730.5 ENSMUST00000197304.2 BC052385 BC057567 BC062966 AK014473 AK165656 BC019617 AK011061
-|tss_cluster_detected=7
+|tss_cluster_detected=3
 |tss_id=rfmm_29356.1
 |tss_score=1
 |uniprot_id=Q9CRZ3 Q9CXF7
 }}