TSS: Rfmm 34064.1: Difference between revisions

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|gene_type=
|gene_type=
|hgnc_mgi_id=MGI:2676882
|hgnc_mgi_id=MGI:2676882
|methods=CAGE
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=NM_001164672.2
|nearest_promoter_id=NM_001164672.2
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|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=mouse
|species=mouse
|start=40723018
|start=40723018

Revision as of 20:33, 22 December 2023

Basic information about the TSS

TSS ID:rfmm_34064.1
Species:mouse
Chr:chr4
Start:40723018
End:40723031
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS (EM10D2727025,EM10E1123144)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:AJ560748:-50
GeneID:387203
HGNC/MGI_ID:MGI:2676882
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:Dnaja1
    Gene_symbol:Mir207
    Gene_synonyms:Mirn207 mmu-mir-207
    Gene_source:MGI:2676882



    TATA-Box annotation

    Distance to TSS:94
    Nearest PromoterID:NM_001164672.2
    Entrez ID:Dnaja1
    Nearest Unigene:NM_001164672
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Dnaja1
    Gene Alias:
    Gene Type:
    CpG%:0.076923
    GC%:0.642857
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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