TSS: Rfmm 35521.1: Difference between revisions

Revision as of 20:58, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_35521.1
Species:	mouse
Chr:	chr4

Start:	61437843
End:	61437843
Strand:	-

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000107483.8:75
GeneID:	100039177
HGNC/MGI_ID:	MGI:3780250
UniProt_ID:	A2CGB6
Nearer transcript ids and distances:

Gene_name:	Mup16
Gene_symbol:	Mup16
Gene_synonyms:	Gm2083
Gene_source:	MGI:3780250

TATA-Box annotation

Distance to TSS:	21
Nearest PromoterID:	XM_006537489.4
Entrez ID:	Mup16
Nearest Unigene:	NM_001199936
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Mup16
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:3780250
+|methods=TSS_database
 |nearest_ensembl=
 |nearest_promoter_id=XM_006537489.4
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=mouse
 |start=61437843