TSS: Rfmm 3647.1: Difference between revisions

Revision as of 21:14, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_3647.1
Species:	mouse
Chr:	chr1

Start:	77491686
End:	77491739
Strand:	-

Source datasets

PRJDB10397|GSE117655|DRA000914

Protocol

C1CAGE|deepCAGE|CAGE_and_CAGEscan

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D1069845,EM10E0442502)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000027451.13:0 ENSMUST00000188952.7:0 ENSMUST00000188797.7:0 ENSMUST00000190149.7:0 ENSMUST00000189934.2:0 ENSMUST00000186930.2:0 AK147698:0 BC052164:0 AK028509:0 S57168:0 X65138:0 AK132203:0
GeneID:	13838
HGNC/MGI_ID:	MGI:98277
UniProt_ID:	A0A087WQW6 A0A087WQZ6 Q03137 Q3V1W9
Nearer transcript ids and distances:

Gene_name:	Epha4
Gene_symbol:	Epha4
Gene_synonyms:	2900005C20Rik Cek8 Hek8 Sek Sek1 Tyro1 rb
Gene_source:	MGI:98277

TATA-Box annotation

Distance to TSS:	13
Nearest PromoterID:	NM_007936.3
Entrez ID:	Epha4
Nearest Unigene:	NM_007936
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Epha4
Gene Alias:
Gene Type:
CpG%:	0.018868
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:98277
+|methods=C1CAGE{{!}}deepCAGE{{!}}CAGE_and_CAGEscan
 |nearest_ensembl=
 |nearest_promoter_id=NM_007936.3
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJDB10397{{!}}GSE117655{{!}}DRA000914
 |species=mouse
 |start=77491686
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENSMUST00000027451.13 ENSMUST00000188952.7 ENSMUST00000188797.7 ENSMUST00000190149.7 ENSMUST00000189934.2 ENSMUST00000186930.2 AK147698 BC052164 AK028509 S57168 X65138 AK132203
-|tss_cluster_detected=7
+|tss_cluster_detected=3
 |tss_id=rfmm_3647.1
 |tss_score=1
 |uniprot_id=A0A087WQW6 A0A087WQZ6 Q03137 Q3V1W9
 }}