TSS: Rfmm 37261.1: Difference between revisions

Revision as of 21:28, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_37261.1
Species:	mouse
Chr:	chr4

Start:	108050271
End:	108050285
Strand:	+

Source datasets

DRA000914

Protocol

CAGE_and_CAGEscan

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	DNase-H3K4me3 (EM10D2745303,EM10E1130077)
Category:	DNase-H3K4me3

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC118568684
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-24655
Nearest PromoterID:	XR_004942149.1
Entrez ID:	LOC118568684
Nearest Unigene:	XR_004942149
Nearest Refseq:
Nearest Ensembl:
Gene Name:	LOC118568684
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.466667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=
+|methods=CAGE_and_CAGEscan
 |nearest_ensembl=
 |nearest_promoter_id=XR_004942149.1
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=DRA000914
 |species=mouse
 |start=108050271