TSS: Rfmm 41285.1: Difference between revisions

Latest revision as of 22:33, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_41285.1
TSS ID(Version3):	mm_34431.1
Species:	mouse
Chr:	chr4

Start:	145397222
End:	145397247
Strand:	+

Source datasets

FANTOM5|PRJDB10397|DRA000914

Protocol

CAGE|C1CAGE|CAGE_and_CAGEscan

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENSMUST00000105738.9
Distance:	8
GeneID:	100041379
HGNC/MGI_ID:	MGI:3712454
UniProt_ID:	A2A9J5

Gene_name:	Zfp980
Gene_symbol:	Zfp980
Gene_synonyms:	Gm13242
Gene_source:	MGI:3712454

TATA-Box annotation

Distance to TSS:	-33
Nearest PromoterID:	NM_001103158.2
Entrez ID:	Zfp980
Nearest Unigene:	NM_001103158
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Zfp980
Gene Alias:
Gene Description:
Gene Type:
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:3712454
+|methods=CAGE{{!}}C1CAGE{{!}}CAGE_and_CAGEscan
 |nearest_ensembl=
 |nearest_promoter_id=NM_001103158.2
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJDB10397{{!}}DRA000914
 |species=mouse
 |start=145397222
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENSMUST00000105738.9
+|tss_cluster_detected=3
 |tss_id=rfmm_41285.1
 |tss_id_v3=mm_34431.1