TSS: Rfmm 42822.1: Difference between revisions

Revision as of 22:58, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_42822.1
Species:	mouse
Chr:	chr5

Start:	8848140
End:	8848164
Strand:	+

Source datasets

PRJDB10397|GSE117655|DRA000914

Protocol

C1CAGE|deepCAGE|CAGE_and_CAGEscan

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D2767439,EM10E1141169)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000199955.5:0 ENSMUST00000196580.5:0 AK030328:0
GeneID:	18669
HGNC/MGI_ID:	MGI:97568
UniProt_ID:	A0A0G2JGL4
Nearer transcript ids and distances:

Gene_name:	Abcb1b
Gene_symbol:	Abcb1b
Gene_synonyms:	Abcb1 Mdr1 Mdr1b Pgy-1 Pgy1 mdr
Gene_source:	MGI:97568

TATA-Box annotation

Distance to TSS:	5
Nearest PromoterID:	NM_011075.2
Entrez ID:	Abcb1b
Nearest Unigene:	NM_011075
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Abcb1b
Gene Alias:
Gene Type:
CpG%:	0.041667
GC%:	0.720000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:97568
+|methods=C1CAGE{{!}}deepCAGE{{!}}CAGE_and_CAGEscan
 |nearest_ensembl=
 |nearest_promoter_id=NM_011075.2
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJDB10397{{!}}GSE117655{{!}}DRA000914
 |species=mouse
 |start=8848140
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENSMUST00000199955.5 ENSMUST00000196580.5 AK030328
-|tss_cluster_detected=7
+|tss_cluster_detected=3
 |tss_id=rfmm_42822.1
 |tss_score=1
 |uniprot_id=A0A0G2JGL4
 }}