TSS: Rfmm 43423.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 21: | Line 21: | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3642883 | |hgnc_mgi_id=MGI:3642883 | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NM_001359881.1 | |nearest_promoter_id=NM_001359881.1 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start=24656701 | |start=24656701 | ||
Latest revision as of 23:09, 22 December 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2770506,EM10E1142097) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -453 |
|---|---|
| Nearest PromoterID: | NM_001359881.1 |
| Entrez ID: | Agap3 |
| Nearest Unigene: | XM_030254355 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Agap3 |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.093023 |
| GC%: | 0.659091 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.