TSS: Hg 105572.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=-222 |entrez_id=7414 |gc_percent=0.741294 |gene_alias=CMD1W|CMH15|HEL114|MV|MVCL |gene_description=vinculin |gene_name=VCL |gen...") |
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{{TSSDetail | {{TSSDetail | ||
|CMH15= | |||
|HEL114= | |||
|MV= | |||
|MVCL= | |||
|all_trans=ENST00000624354.3:219 ENST00000211998.8:219 ENST00000372755.7:219 NM_014000:219 NM_003373:219 uc010qky.2:219 uc001jwd.4:219 uc001jwe.4:219 AK304823:219 EU794673:219 ENST00000478896.2:221 uc057uer.1:221 AK300280:221 AK296509:222 BC099919:231 BC039174:232 M33308:270 AB385172:309 DQ894680:313 | |||
|chr=chr10 | |||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=219 | |||
|distance_to_tss=-222 | |distance_to_tss=-222 | ||
|end=73997895 | |||
|entrez_id=7414 | |entrez_id=7414 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
|gene_alias=CMD1W|CMH15|HEL114|MV|MVCL | |gene_alias=CMD1W|CMH15|HEL114|MV|MVCL | ||
|gene_description=vinculin | |gene_description=vinculin | ||
|gene_name=VCL | |gene_id=7414 | ||
|gene_name=vinculin | |||
|gene_source=HGNC:12665 | |||
|gene_symbol=VCL | |||
|gene_synonyms= | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:12665 | |||
|nearest_ensembl=ENSG00000035403 | |nearest_ensembl=ENSG00000035403 | ||
|nearest_promoter_id=NM_003373 | |nearest_promoter_id=NM_003373 | ||
|nearest_refseq=NM_003373 | |nearest_refseq=NM_003373 | ||
|nearest_unigene=Hs.643896 | |nearest_unigene=Hs.643896 | ||
|num_trans=19 | |||
|species=human | |||
|start=73997888 | |||
|strand=+ | |||
|tata_box="-33(GCCCTTATAAGG,-,0.00),-31(CCTTATAAGGAG,+,0.00)" | |tata_box="-33(GCCCTTATAAGG,-,0.00),-31(CCTTATAAGGAG,+,0.00)" | ||
|transcript_name=ENST00000624354.3 ENST00000211998.8 ENST00000372755.7 NM_014000 NM_003373 uc010qky.2 uc001jwd.4 uc001jwe.4 AK304823 EU794673 | |||
|tss_classification=yes | |||
|tss_id=hg_105572.1 | |tss_id=hg_105572.1 | ||
|tss_score=1 | |||
|uniprot_id=A0A024QZN4 A0A096LPE1 B4E3Q9 P18206 V9HWK2 | |||
}} | }} | ||
Revision as of 21:41, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -222 |
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| Nearest PromoterID: | NM_003373 |
| Entrez ID: | 7414 |
| Nearest Unigene: | Hs.643896 |
| Nearest Refseq: | NM_003373 |
| Nearest Ensembl: | ENSG00000035403 |
| Gene Name: | vinculin |
| Gene Alias: | CMD1W |
| Gene Description: | vinculin |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-33(GCCCTTATAAGG,-,0.00),-31(CCTTATAAGGAG,+,0.00)" |
TSS expression
Expression data not found.