TSS: Rfmm 51608.1: Difference between revisions

Revision as of 01:23, 23 December 2023

Basic information about the TSS

TSS ID:	rfmm_51608.1
TSS ID(Version3):	mm_43570.1
Species:	mouse
Chr:	chr5

Start:	137639526
End:	137639597
Strand:	+

Source datasets

FANTOM5|DRA000914|PRJDB10397

Protocol

CAGE|CAGE_and_CAGEscan|C1CAGE

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2806419,EM10E1157428)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000177466.8:0
GeneID:	751865
HGNC/MGI_ID:	MGI:3802945
UniProt_ID:	H3BLC5
Nearer transcript ids and distances:

Gene_name:	Sap25
Gene_symbol:	Sap25
Gene_synonyms:	25_kDa
Gene_source:	MGI:3802945

TATA-Box annotation

Distance to TSS:	-174
Nearest PromoterID:	NM_001081962.2
Entrez ID:	Sap25
Nearest Unigene:	NM_001081962
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Sap25
Gene Alias:
Gene Type:
CpG%:	0.098592
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:3802945
+|methods=CAGE{{!}}CAGE_and_CAGEscan{{!}}C1CAGE
 |nearest_ensembl=
 |nearest_promoter_id=NM_001081962.2
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}DRA000914{{!}}PRJDB10397
 |species=mouse
 |start=137639526
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENSMUST00000177466.8
+|tss_cluster_detected=3
 |tss_id=rfmm_51608.1
 |tss_id_v3=mm_43570.1