TSS: Rfmm 54555.1: Difference between revisions

Revision as of 02:12, 23 December 2023

Basic information about the TSS

TSS ID:	rfmm_54555.1
Species:	mouse
Chr:	chr6

Start:	34965374
End:	34965390
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D1986109,EM10E0817168)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000201355.4:35
GeneID:	243753
HGNC/MGI_ID:	MGI:1917272
UniProt_ID:	A0A0J9YUX7
Nearer transcript ids and distances:

Gene_name:	Slc23a4
Gene_symbol:	Slc23a4
Gene_synonyms:	2010107G12Rik LOC243753
Gene_source:	MGI:1917272

TATA-Box annotation

Distance to TSS:	48
Nearest PromoterID:	XM_006506134.4
Entrez ID:	Slc23a4
Nearest Unigene:	NM_001025573
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Slc23a4
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.529412
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:1917272
+|methods=CAGE
 |nearest_ensembl=
 |nearest_promoter_id=XM_006506134.4
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=mouse
 |start=34965374