TSS: Rfmm 68388.1: Difference between revisions
From referenceTSS
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|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3689889 | |hgnc_mgi_id=MGI:3689889 | ||
|methods=C1CAGE{{!}}deepCAGE{{!}}CAGE_and_CAGEscan | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NM_001115087.1 | |nearest_promoter_id=NM_001115087.1 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJDB10397{{!}}GSE117655{{!}}DRA000914 | |||
|species=mouse | |species=mouse | ||
|start=51511965 | |start=51511965 | ||
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|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000169357.2 | |transcript_name=ENSMUST00000169357.2 | ||
|tss_cluster_detected= | |tss_cluster_detected=3 | ||
|tss_id=rfmm_68388.1 | |tss_id=rfmm_68388.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=E9Q5Z5 | |uniprot_id=E9Q5Z5 | ||
}} | }} | ||
Latest revision as of 05:59, 23 December 2023
Basic information about the TSS
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| Source datasets | PRJDB10397|GSE117655|DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | C1CAGE|deepCAGE|CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2867930,EM10E1184050) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NM_001115087.1 |
| Entrez ID: | Fancf |
| Nearest Unigene: | NM_001115087 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Fancf |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.125000 |
| GC%: | 0.661538 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.