TSS: Rfmm 70610.1: Difference between revisions

Revision as of 06:35, 23 December 2023

Basic information about the TSS

TSS ID:	rfmm_70610.1
Species:	mouse
Chr:	chr7

Start:	97794680
End:	97794686
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK133724:0
GeneID:	18378
HGNC/MGI_ID:	MGI:97436
UniProt_ID:	Q3UZQ4
Nearer transcript ids and distances:

Gene_name:	Omp
Gene_symbol:	Omp
Gene_synonyms:
Gene_source:	MGI:97436

TATA-Box annotation

Distance to TSS:	-29
Nearest PromoterID:	NM_011010.2
Entrez ID:	Omp
Nearest Unigene:	NM_011010
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Omp
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.428571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:97436
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=
 |nearest_promoter_id=NM_011010.2
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=mouse
 |start=97794680