TSS: Rfmm 96249.1: Difference between revisions

Revision as of 13:38, 23 December 2023

Basic information about the TSS

TSS ID:	rfmm_96249.1
Species:	mouse
Chr:	chr10

Start:	62425625
End:	62425658
Strand:	-

Source datasets

PRJDB10397

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000218393.2:-298
GeneID:	56200
HGNC/MGI_ID:	MGI:1860494
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Kifbp
Gene_symbol:	Ddx21
Gene_synonyms:	D10Ertd645e D10Wsu42e DEAD_(Asp-Glu-Ala-Asp)_box_polypeptide_21 RH-II/Gualpha RH_II/Gu
Gene_source:	MGI:1860494

TATA-Box annotation

Distance to TSS:	-10795
Nearest PromoterID:	XM_006514192.5
Entrez ID:	Kifbp
Nearest Unigene:	NM_028197
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Kifbp
Gene Alias:
Gene Type:
CpG%:	0.030303
GC%:	0.529412
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:1860494
+|methods=C1CAGE
 |nearest_ensembl=
 |nearest_promoter_id=XM_006514192.5
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJDB10397
 |species=mouse
 |start=62425625