TSS: Rfmm 96258.1: Difference between revisions

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|gene_type=
|gene_type=
|hgnc_mgi_id=MGI:1860494
|hgnc_mgi_id=MGI:1860494
|methods=CAGE{{!}}TSS_database{{!}}CAGE_and_CAGEscan{{!}}C1CAGE{{!}}deepCAGE
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=XM_030245181.1
|nearest_promoter_id=XM_030245181.1
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}PRJDB10397{{!}}GSE117655
|species=mouse
|species=mouse
|start=62437951
|start=62437951
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|tata_box=
|tata_box=
|transcript_name=ENSMUST00000045866.9 BC060220 BC043655 BC059237 AF159131 AK160095 AK010281 AK145578 AK012125
|transcript_name=ENSMUST00000045866.9 BC060220 BC043655 BC059237 AF159131 AK160095 AK010281 AK145578 AK012125
|tss_cluster_detected=5
|tss_id=rfmm_96258.1
|tss_id=rfmm_96258.1
|tss_id_v3=mm_168189.1;mm_168190.1;mm_92072.1
|tss_id_v3=mm_168189.1;mm_168190.1;mm_92072.1

Revision as of 13:38, 23 December 2023

Basic information about the TSS

TSS ID:rfmm_96258.1
TSS ID(Version3):mm_168189.1
mm_168190.1
mm_92072.1
Species:mouse
Chr:chr10
Start:62437951
End:62438116
Strand:-
Source datasetsFANTOM5|EPD|DRA000914|PRJDB10397|GSE117655
ProtocolCAGE|TSS_database|CAGE_and_CAGEscan|C1CAGE|deepCAGE
TSS cluster detected*5

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS (EM10D2325866,EM10E0957751)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000045866.9:0
BC060220:0
BC043655:0
BC059237:0
AF159131:0
AK160095:0
AK010281:0
AK145578:0
AK012125:0
GeneID:56200
HGNC/MGI_ID:MGI:1860494
UniProt_ID:Q3ULC7 Q6PCP0 Q9CSR3 Q9CWZ5 Q9JIK5
Nearer transcript ids and distances:
    Gene_name:Ddx21
    Gene_symbol:Ddx21
    Gene_synonyms:D10Ertd645e D10Wsu42e DEAD_(Asp-Glu-Ala-Asp)_box_polypeptide_21 RH-II/Gualpha RH_II/Gu
    Gene_source:MGI:1860494



    TATA-Box annotation

    Distance to TSS:38
    Nearest PromoterID:XM_030245181.1
    Entrez ID:Ddx21
    Nearest Unigene:NM_019553
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Ddx21
    Gene Alias:
    Gene Type:
    CpG%:0.078788
    GC%:0.626506
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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