TSS: Rfmm 99515.1: Difference between revisions

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|gene_type=
|gene_type=
|hgnc_mgi_id=MGI:1913356 MGI:1919082
|hgnc_mgi_id=MGI:1913356 MGI:1919082
|methods=CAGE{{!}}TSS_database
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=NM_027945.3
|nearest_promoter_id=NM_027945.3
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|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5{{!}}EPD
|species=mouse
|species=mouse
|start=99595468
|start=99595468

Revision as of 14:33, 23 December 2023

Basic information about the TSS

TSS ID:rfmm_99515.1
Species:mouse
Chr:chr10
Start:99595468
End:99595478
Strand:-
Source datasetsFANTOM5|EPD
ProtocolCAGE|TSS_database
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000056085.6:-42
AK005713:-42
GeneID:71832
HGNC/MGI_ID:MGI:1913356 MGI:1919082
UniProt_ID:Q80X68 Q9DAM4
Nearer transcript ids and distances:
    Gene_name:Csl
    Gene_symbol:Csl Smpx
    Gene_synonyms:1010001C09Rik 1700007H16Rik Csl chisel
    Gene_source:MGI:1913356 MGI:1919082



    TATA-Box annotation

    Distance to TSS:47
    Nearest PromoterID:NM_027945.3
    Entrez ID:Csl
    Nearest Unigene:NM_027945
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Csl
    Gene Alias:
    Gene Type:
    CpG%:0.100000
    GC%:0.636364
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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