Template: TSSDetailV4: Difference between revisions

Revision as of 09:23, 26 December 2023

Basic information about the TSS

TSS ID:	{{{tss_id}}}
Species:
Chr:

Start:
End:
Strand:

Source datasets

Protocol

TSS cluster detected^*

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:
Category:

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:
Distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:
Nearest PromoterID:
Entrez ID:
Nearest Unigene:
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Description:
Gene Type:
CpG%:
GC%:
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 151: / Line 151: @@
 {{#set:species={{{species}}}}}
 {{#set:distance_to_tss={{{distance_to_tss}}}}}
-{{#set:nearest_promoter_id={{{nearest_promoter_id}}}}}
+{{#set:nearest_promoter_id={{{nearest_promoter_id|}}}}}
-{{#set:entrez_id={{{entrez_id}}}}}
+{{#set:entrez_id={{{entrez_id|}}}}}
-{{#set:nearest_unigene={{{nearest_unigene}}}}}
+{{#set:nearest_unigene={{{nearest_unigene|}}}}}
-{{#set:nearest_refseq={{{nearest_refseq}}}}}
+{{#set:nearest_refseq={{{nearest_refseq|}}}}}
 {{#set:nearest_ensembl={{{nearest_ensembl}}}}}
-{{#set:gene_name={{{gene_name}}}}}
+{{#set:gene_name={{{gene_name|}}}}}
-{{#set:gene_alias={{{gene_alias}}}}}
+{{#set:gene_alias={{{gene_alias|}}}}}
-{{#set:gene_description={{{gene_description}}}}}
+{{#set:gene_description={{{gene_description|}}}}}
-{{#set:gene_type={{{gene_type}}}}}
+{{#set:gene_type={{{gene_type|}}}}}
 {{#set:cpg_percent={{{cpg_percent|}}}}}
 {{#set:gc_percent={{{gc_percent|}}}}}
@@ Line 166: / Line 166: @@
 {{#set:distance={{{distance}}}}}
 {{#set:gene_id={{{gene_id}}}}}
-{{#set:hgnc_mgi_id={{{hgnc_mgi_id}}}}}
+{{#set:hgnc_mgi_id={{{hgnc_mgi_id|}}}}}
-{{#set:uniprot_id={{{uniprot_id}}}}}
+{{#set:uniprot_id={{{uniprot_id|}}}}}
-{{#set:gene_name={{{gene_name}}}}}
+{{#set:gene_name={{{gene_name|}}}}}
 {{#set:gene_symbol={{{gene_symbol|}}}}}
-{{#set:gene_synonyms={{{gene_synonyms}}}}}
+{{#set:gene_synonyms={{{gene_synonyms|}}}}}
-{{#set:gene_source={{{gene_source}}}}}
+{{#set:gene_source={{{gene_source|}}}}}
 {{#set:chr={{{chr}}}}}
 {{#set:start={{{start|}}}}}
@@ Line 180: / Line 180: @@
 <!-- {{#set:num_trans={{{num_trans|}}}}} -->
 <!--{{#set:all_trans={{{all_trans}}}}} -->
-{{#set:tss_classification={{{tss_classification}}}}}
+{{#set:tss_classification={{{tss_classification|}}}}}
 {{#set:tss_id_v3={{{tss_id_v3|}}}}}
 {{#set:tss_cluster_detected={{{tss_cluster_detected|}}}}}