Template: TSSDetail: Difference between revisions

Latest revision as of 17:42, 14 May 2024

Basic information about the TSS

TSS ID:	{{{tss_id}}}
Species:
Chr:

Start:
End:
Strand:

TSS cluster detected^*

* The number of TSS cluster called studies (maximum 5)

Gene and protein annotation

Transcript_name:
Distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:
Nearest PromoterID:
Entrez ID:
Nearest Unigene:
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Description:
Gene Type:
CpG%:
GC%:
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):

@@ Line 138: / Line 138: @@
 <script type="text/javascript" src="reftss_js/gene_exptable.js"></script></html>
 {{#set:tss_id={{{tss_id}}}}}
-{{#set:species={{{species}}}}}
+{{#set:gene_name={{{gene_name|}}}}}
-{{#set:distance_to_tss={{{distance_to_tss}}}}}
+{{#set:entrez_id={{{entrez_id|}}}}}
-{{#set:nearest_promoter_id={{{nearest_promoter_id}}}}}
-{{#set:entrez_id={{{entrez_id}}}}}
-{{#set:nearest_unigene={{{nearest_unigene}}}}}
-{{#set:nearest_refseq={{{nearest_refseq}}}}}
-{{#set:nearest_ensembl={{{nearest_ensembl}}}}}
-{{#set:gene_name={{{gene_name}}}}}
-{{#set:gene_alias={{{gene_alias}}}}}
-{{#set:gene_description={{{gene_description}}}}}
-{{#set:gene_type={{{gene_type}}}}}
-{{#set:cpg_percent={{{cpg_percent|}}}}}
-{{#set:gc_percent={{{gc_percent|}}}}}
-<!-- {{#set:tata_box={{{tata_box}}}}} -->
-{{#set:transcript_name={{{transcript_name}}}}}
-{{#set:distance={{{distance}}}}}
 {{#set:gene_id={{{gene_id}}}}}
-{{#set:hgnc_mgi_id={{{hgnc_mgi_id}}}}}
-{{#set:uniprot_id={{{uniprot_id}}}}}
-{{#set:gene_name={{{gene_name}}}}}
-{{#set:gene_symbol={{{gene_symbol|}}}}}
-{{#set:gene_synonyms={{{gene_synonyms}}}}}
-{{#set:gene_source={{{gene_source}}}}}
-{{#set:chr={{{chr}}}}}
-{{#set:start={{{start|}}}}}
-{{#set:end={{{end|}}}}}
-{{#set:tss_score={{{tss_score|}}}}}
-{{#set:strand={{{strand}}}}}
-<!-- {{#set:distance={{{distance}}}}} -->
-<!-- {{#set:num_trans={{{num_trans|}}}}} -->
-<!--{{#set:all_trans={{{all_trans}}}}} -->
-{{#set:tss_classification={{{tss_classification}}}}}
-{{#set:tss_id_v3={{{tss_id_v3|}}}}}
-{{#set:tss_cluster_detected={{{tss_cluster_detected|}}}}}
 [[Category:TSS_IDs]]