TSS: Rfhg 100125.1: Difference between revisions

Revision as of 15:03, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_100125.1
Species:	human
Chr:	chr7

Start:	130885309
End:	130885328
Strand:	+

Source datasets

PRJNA548673

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D4031107,EH38E2590638)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MIR29B1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-7779
Nearest PromoterID:	NR_029517
Entrez ID:	407024
Nearest Unigene:
Nearest Refseq:	NR_029517
Nearest Ensembl:	ENSG00000283797
Gene Name:	MIR29B1
Gene Alias:	MIRN29B1\|miR-29b\|miRNA29B1\|mir-29b-1
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.550000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NR_110472, intron 2 of 3)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_029517
 |nearest_refseq=NR_029517
+|nearest_transcripts=
 |nearest_unigene=
 |peak_score=1