TSS: Rfhg 100154.1: Difference between revisions

Revision as of 15:04, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_100154.1
Species:	human
Chr:	chr7

Start:	130913241
End:	130913246
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D4031168,EH38E2590693)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000418546.1:44
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000432045.6:-64 NR_110473.1:-64 NR_034120.1:-64 NR_110472.1:-64 AK095549:-64 LP896493:-64 ENST00000447307.5:65 GU321462:110 MG322760:134 view more...

Gene_name:	LINC-PINT
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	67
Nearest PromoterID:	NR_034120
Entrez ID:	378805
Nearest Unigene:	Hs.150556
Nearest Refseq:	NM_001085379
Nearest Ensembl:	ENSG00000231721
Gene Name:	LINC-PINT
Gene Alias:	LincRNA-Pint\|MKLN1-AS1\|PINT
Gene Type:	ncRNA
CpG%:	0.200000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000418546.1:44 ENST00000432045.6:-64 NR_110473.1:-64 NR_034120.1:-64 NR_110472.1:-64 AK095549:-64 LP896493:-64 ENST00000447307.5:65 GU321462:110 MG322760:134
 |annotation=promoter-TSS (NR_034120)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_034120
 |nearest_refseq=NM_001085379
+|nearest_transcripts=ENST00000432045.6:-64 NR_110473.1:-64 NR_034120.1:-64 NR_110472.1:-64 AK095549:-64 LP896493:-64 ENST00000447307.5:65 GU321462:110 MG322760:134
 |nearest_unigene=Hs.150556
 |peak_score=1