TSS: Rfhg 100195.1: Difference between revisions

Revision as of 15:06, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_100195.1
Species:	human
Chr:	chr7

Start:	130960381
End:	130960403
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D4031253,EH38E2590776)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LINC00513
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	46928
Nearest PromoterID:	NR_109780
Entrez ID:	100506860
Nearest Unigene:	Hs.635013
Nearest Refseq:	NR_109780
Nearest Ensembl:
Gene Name:	LINC00513
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.304348
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NR_109852, intron 4 of 5)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_109780
 |nearest_refseq=NR_109780
+|nearest_transcripts=
 |nearest_unigene=Hs.635013
 |peak_score=1