TSS: Rfhg 100219.1: Difference between revisions

Revision as of 15:06, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_100219.1
Species:	human
Chr:	chr7

Start:	131057457
End:	131057468
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D4031358,EH38E2590877)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LINC-PINT
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	49568
Nearest PromoterID:	NR_024153
Entrez ID:	378805
Nearest Unigene:	Hs.150556
Nearest Refseq:	NM_001085379
Nearest Ensembl:	ENSG00000231721
Gene Name:	LINC-PINT
Gene Alias:	LincRNA-Pint\|MKLN1-AS1\|PINT
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.416667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NR_109850, intron 2 of 5)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_024153
 |nearest_refseq=NM_001085379
+|nearest_transcripts=
 |nearest_unigene=Hs.150556
 |peak_score=1