TSS: Rfhg 100304.1: Difference between revisions

Revision as of 15:10, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_100304.1
Species:	human
Chr:	chr7

Start:	131511333
End:	131511360
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF361233:-146 MA596810:-146
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF361232:-277 MA596809:-277 LF361231:-432 MA596808:-432 view more...

Gene_name:	PODXL
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	45282
Nearest PromoterID:	NM_001018111
Entrez ID:	5420
Nearest Unigene:	Hs.744213
Nearest Refseq:	NM_005397
Nearest Ensembl:	ENSG00000128567
Gene Name:	PODXL
Gene Alias:	Gp200\|PC\|PCLP\|PCLP-1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.607143
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF361233:-146 MA596810:-146 LF361232:-277 MA596809:-277 LF361231:-432 MA596808:-432
 |annotation=exon (NM_005397, exon 2 of 8)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001018111
 |nearest_refseq=NM_005397
+|nearest_transcripts=LF361232:-277 MA596809:-277 LF361231:-432 MA596808:-432
 |nearest_unigene=Hs.744213
 |peak_score=1