TSS: Rfhg 100380.1: Difference between revisions

Revision as of 15:14, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_100380.1
Species:	human
Chr:	chr7

Start:	133650962
End:	133650965
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D4033725,EH38E2592360)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC101928861
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	173925
Nearest PromoterID:	NR_120513
Entrez ID:	101928861
Nearest Unigene:	Hs.675747
Nearest Refseq:	NR_120513
Nearest Ensembl:
Gene Name:	LOC101928861
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_021807, intron 10 of 17)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_120513
 |nearest_refseq=NR_120513
+|nearest_transcripts=
 |nearest_unigene=Hs.675747
 |peak_score=1