TSS: Rfhg 100670.1: Difference between revisions

Revision as of 15:27, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_100670.1
TSS ID(Version3):	hg_81392.1
Species:	human
Chr:	chr7

Start:	137513813
End:	137513821
Strand:	+

Source datasets

FANTOM5|DRA000914|PRJNA401781|PRJNA615891|PRJNA548673

Protocol

CAGE|oligo_capping|SLIC_CAGE|RAMPAGE|ReCappable-seq

TSS cluster detected^*

8

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000623936.2:38
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PTN
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-170084
Nearest PromoterID:	NM_002825
Entrez ID:	5764
Nearest Unigene:	Hs.371249
Nearest Refseq:	NM_002825
Nearest Ensembl:	ENSG00000105894
Gene Name:	PTN
Gene Alias:	HARP\|HB-GAM\|HBBM\|HBGF-8\|HBGF8\|HBNF\|HBNF-1\|NEGF1\|OSF-1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.444444
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000623936.2:38
 |annotation=intron (NM_001321710, intron 21 of 32)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_002825
 |nearest_refseq=NM_002825
+|nearest_transcripts=
 |nearest_unigene=Hs.371249
 |peak_score=1