TSS: Rfhg 100831.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF361758:-279 MA597335:-279
|annotation=intron (NM_173569, intron 3 of 17)
|annotation=intron (NM_173569, intron 3 of 17)
|ccre_category=N
|ccre_category=N
Line 25: Line 26:
|nearest_promoter_id=NM_173569
|nearest_promoter_id=NM_173569
|nearest_refseq=NM_173569
|nearest_refseq=NM_173569
|nearest_transcripts=
|nearest_unigene=Hs.153458
|nearest_unigene=Hs.153458
|peak_score=1
|peak_score=1

Revision as of 15:35, 6 November 2024

Basic information about the TSS

TSS ID:rfhg_100831.1
Species:human
Chr:chr7
Start:139252217
End:139252220
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF361758:-279
MA597335:-279
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:UBN2
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:20981
    Nearest PromoterID:NM_173569
    Entrez ID:254048
    Nearest Unigene:Hs.153458
    Nearest Refseq:NM_173569
    Nearest Ensembl:ENSG00000157741
    Gene Name:UBN2
    Gene Alias:-
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.000000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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