TSS: Rfhg 100888.1: Difference between revisions

Revision as of 15:37, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_100888.1
Species:	human
Chr:	chr7

Start:	139626607
End:	139626607
Strand:	-

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D4038625,EH38E2595717)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF361850:13 MA597427:13
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF361851:-338 MA597428:-338 view more...

Gene_name:	CLEC2L
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	102922
Nearest PromoterID:	NM_001080511
Entrez ID:	154790
Nearest Unigene:	Hs.57806
Nearest Refseq:	NM_001080511
Nearest Ensembl:	ENSG00000236279
Gene Name:	CLEC2L
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF361850:13 MA597427:13 LF361851:-338 MA597428:-338
 |annotation=exon (NM_022740, exon 6 of 15)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001080511
 |nearest_refseq=NM_001080511
+|nearest_transcripts=LF361851:-338 MA597428:-338
 |nearest_unigene=Hs.57806
 |peak_score=1