TSS: Rfhg 10089.1: Difference between revisions

Revision as of 15:37, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_10089.1
Species:	human
Chr:	chr1

Start:	102905501
End:	102905516
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	COL11A1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	202988
Nearest PromoterID:	NM_080629
Entrez ID:	1301
Nearest Unigene:	Hs.523446
Nearest Refseq:	NM_001854
Nearest Ensembl:	ENSG00000060718
Gene Name:	COL11A1
Gene Alias:	CO11A1\|COLL6\|STL2
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.375000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_001854, intron 54 of 66)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_080629
 |nearest_refseq=NM_001854
+|nearest_transcripts=
 |nearest_unigene=Hs.523446
 |peak_score=1