TSS: Rfhg 100908.1: Difference between revisions

Revision as of 15:38, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_100908.1
Species:	human
Chr:	chr7

Start:	139718947
End:	139718960
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D4038749,EH38E2595837)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	HIPK2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	59045
Nearest PromoterID:	NM_022740
Entrez ID:	28996
Nearest Unigene:	Hs.731417
Nearest Refseq:	NM_022740
Nearest Ensembl:	ENSG00000064393
Gene Name:	HIPK2
Gene Alias:	PRO0593
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.285714
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_001113239, intron 1 of 14)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_022740
 |nearest_refseq=NM_022740
+|nearest_transcripts=
 |nearest_unigene=Hs.731417
 |peak_score=1