TSS: Rfhg 100920.1: Difference between revisions

Revision as of 15:38, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_100920.1
Species:	human
Chr:	chr7

Start:	139778115
End:	139778130
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4038833,EH38E2595915)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF213901:101 MA449478:101
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000406875.8:117 NM_022740.5:117 NM_001113239.3:117 ENST00000428878.6:337 AF326592:337 AF208291:397 view more...

Gene_name:	TBXAS1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-120
Nearest PromoterID:	NM_001166254
Entrez ID:	6916
Nearest Unigene:	Hs.520757
Nearest Refseq:	NM_001061
Nearest Ensembl:	ENSG00000059377
Gene Name:	TBXAS1
Gene Alias:	BDPLT14\|CYP5\|CYP5A1\|GHOSAL\|THAS\|TS\|TXAS\|TXS
Gene Type:	protein-coding
CpG%:	0.133333
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF213901:101 MA449478:101 ENST00000406875.8:117 NM_022740.5:117 NM_001113239.3:117 ENST00000428878.6:337 AF326592:337 AF208291:397
 |annotation=promoter-TSS (NM_022740)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001166254
 |nearest_refseq=NM_001061
+|nearest_transcripts=ENST00000406875.8:117 NM_022740.5:117 NM_001113239.3:117 ENST00000428878.6:337 AF326592:337 AF208291:397
 |nearest_unigene=Hs.520757
 |peak_score=1