TSS: Rfhg 10108.1: Difference between revisions

Revision as of 15:43, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_10108.1
Species:	human
Chr:	chr1

Start:	103535991
End:	103535991
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AL832291:144
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	RNPC3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	10292
Nearest PromoterID:	NM_017619
Entrez ID:	55599
Nearest Unigene:	Hs.632423
Nearest Refseq:	NM_017619
Nearest Ensembl:	ENSG00000185946
Gene Name:	RNPC3
Gene Alias:	IGHD5\|RBM40\|RNP\|SNRNP65
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AL832291:144
 |annotation=intron (NM_017619, intron 5 of 14)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_017619
 |nearest_refseq=NM_017619
+|nearest_transcripts=
 |nearest_unigene=Hs.632423
 |peak_score=1