TSS: Rfhg 10116.1: Difference between revisions

Revision as of 15:46, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_10116.1
Species:	human
Chr:	chr1

Start:	103655538
End:	103655538
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001008221.1:-19
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000370083.9:222 NM_004038.4:222 ENST00000422549.1:480 view more...

Gene_name:	AMY1A
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	19
Nearest PromoterID:	NM_001008221
Entrez ID:	276
Nearest Unigene:	Hs.655232
Nearest Refseq:	NM_004038
Nearest Ensembl:	ENSG00000237763
Gene Name:	AMY1A
Gene Alias:	AMY1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001008221.1:-19 ENST00000370083.9:222 NM_004038.4:222 ENST00000422549.1:480
 |annotation=promoter-TSS (NM_001008221)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001008221
 |nearest_refseq=NM_004038
+|nearest_transcripts=ENST00000370083.9:222 NM_004038.4:222 ENST00000422549.1:480
 |nearest_unigene=Hs.655232
 |peak_score=1