TSS: Rfhg 101162.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=AB977784:0 AB977904:0 S82065:7 X57616:-21 X57617:-21 X57618:-21 AB977851:28 AB977651:28 AB977825:30 DQ473378:31 DQ473379:31 DQ473384:31 DQ473388:31 AB977983:36 AB305990:-41 AB977578:-68 M13856:91 KX076483:92 KX076348:95 KX075549:100 KX076278:100 MG192843:103 MG193115:103 MG192620:103 MG192778:103 MG192820:103 MG192935:103 MG193117:103 MG193113:103 MG192918:103 MG192990:103 AF428128:103 MG192897:103 AF428129:103 AF428126:103 MG789114:103 MG789197:103 MG789264:103 MG789535:103 MG789565:103 MG789625:103 MG789654:103 MG790034:103 MG790047:103 MG790778:103 KM004232:103 EU340842:103 AY123173:103 AY123179:103 AY123182:103 AY123185:103 MG192709:103 MG192767:103 MG192821:103 MG192939:103 MG192686:103 AY123172:103 AY123178:103 AY123181:103 AY123184:103 MG192552:103 MG192708:103 MG192837:103 MG192851:103 MG192978:103 MG193105:103 AY123186:103 MG192667:103 MG192817:103 MG192735:103 MG192934:103 MG192975:103 MG193009:103 MG193072:103 MG193091:103 MG789081:103 MG789096:103 MG789103:103 MG789296:103 MG789344:103 MG789384:103 MG789433:103 MG789611:103 MG789798:103 MG789869:103 MG790116:103 MG790253:103 MG790409:103 MG790504:103 MG790979:103 KM004036:103 KM004228:103 KM004692:103 AY292265:103 AY292266:103 MK088556:103 AY190092:106 AY190098:107 KX074565:109 KX074893:109 KX075900:109 KX076646:109 KX076149:109 KX076045:109 KX076074:109 KX074314:109 KX076217:109 KX076372:109 KX075161:109 KX075750:109 KX076349:109 KX076351:109 KX076354:109 KX076376:109 KX077046:109 KX074437:109 KX074579:109 KX074720:109 KX075318:109 KX076170:109 HM236761:109 GQ502886:109 KX075139:110 KX075575:110 HM236505:112 AY751922:112 HM236582:112 HM236567:115 HM236706:115 HM236506:118 L34729:118 L34726:121 U39140:121 HM236556:124 HM236719:124 KX076153:127 U39133:133 AB978015:136 KX076936:136 AF037567:143 KX074993:147 KX075673:147 KX074878:147 KX074527:147 KX074873:147 KX076347:147 AF045810:148 AJ305359:148 X62856:-217 AB978075:-217 D13083:-230 L06888:-239 AB305935:-243 X58812:-254 AB305807:-254 AB977853:-269 AB977557:-269 AB977820:-269 AB305853:-269 AB977753:-269 AB977910:-269 U47744:-275 AB305937:-313 U47743:-335 AB305887:-348 X58811:-349 AB306255:-349 LP896468:-350 AB305961:-350 AB977888:-351 | |||
|annotation=Intergenic | |annotation=Intergenic | ||
|ccre_category=N | |ccre_category=N | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NR_036483 | |nearest_promoter_id=NR_036483 | ||
|nearest_refseq=NR_036483 | |nearest_refseq=NR_036483 | ||
|nearest_transcripts=S82065:7 X57616:-21 X57617:-21 X57618:-21 AB977851:28 AB977651:28 AB977825:30 DQ473378:31 DQ473379:31 DQ473384:31 DQ473388:31 AB977983:36 AB305990:-41 AB977578:-68 M13856:91 KX076483:92 KX076348:95 KX075549:100 KX076278:100 MG192843:103 MG193115:103 MG192620:103 MG192778:103 MG192820:103 MG192935:103 MG193117:103 MG193113:103 MG192918:103 MG192990:103 AF428128:103 MG192897:103 AF428129:103 AF428126:103 MG789114:103 MG789197:103 MG789264:103 MG789535:103 MG789565:103 MG789625:103 MG789654:103 MG790034:103 MG790047:103 MG790778:103 KM004232:103 EU340842:103 AY123173:103 AY123179:103 AY123182:103 AY123185:103 MG192709:103 MG192767:103 MG192821:103 MG192939:103 MG192686:103 AY123172:103 AY123178:103 AY123181:103 AY123184:103 MG192552:103 MG192708:103 MG192837:103 MG192851:103 MG192978:103 MG193105:103 AY123186:103 MG192667:103 MG192817:103 MG192735:103 MG192934:103 MG192975:103 MG193009:103 MG193072:103 MG193091:103 MG789081:103 MG789096:103 MG789103:103 MG789296:103 MG789344:103 MG789384:103 MG789433:103 MG789611:103 MG789798:103 MG789869:103 MG790116:103 MG790253:103 MG790409:103 MG790504:103 MG790979:103 KM004036:103 KM004228:103 KM004692:103 AY292265:103 AY292266:103 MK088556:103 AY190092:106 AY190098:107 KX074565:109 KX074893:109 KX075900:109 KX076646:109 KX076149:109 KX076045:109 KX076074:109 KX074314:109 KX076217:109 KX076372:109 KX075161:109 KX075750:109 KX076349:109 KX076351:109 KX076354:109 KX076376:109 KX077046:109 KX074437:109 KX074579:109 KX074720:109 KX075318:109 KX076170:109 HM236761:109 GQ502886:109 KX075139:110 KX075575:110 HM236505:112 AY751922:112 HM236582:112 HM236567:115 HM236706:115 HM236506:118 L34729:118 L34726:121 U39140:121 HM236556:124 HM236719:124 KX076153:127 U39133:133 AB978015:136 KX076936:136 AF037567:143 KX074993:147 KX075673:147 KX074878:147 KX074527:147 KX074873:147 KX076347:147 AF045810:148 AJ305359:148 X62856:-217 AB978075:-217 D13083:-230 L06888:-239 AB305935:-243 X58812:-254 AB305807:-254 AB977853:-269 AB977557:-269 AB977820:-269 AB305853:-269 AB977753:-269 AB977910:-269 U47744:-275 AB305937:-313 U47743:-335 AB305887:-348 X58811:-349 AB306255:-349 LP896468:-350 AB305961:-350 AB977888:-351 | |||
|nearest_unigene=Hs.604069 | |nearest_unigene=Hs.604069 | ||
|peak_score=1 | |peak_score=1 | ||
Revision as of 15:46, 6 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -73532 |
|---|---|
| Nearest PromoterID: | NR_036483 |
| Entrez ID: | 207147 |
| Nearest Unigene: | Hs.604069 |
| Nearest Refseq: | NR_036483 |
| Nearest Ensembl: | ENSG00000186163 |
| Gene Name: | TRY2P |
| Gene Alias: | - |
| Gene Type: | pseudo |
| CpG%: | 0.050000 |
| GC%: | 0.523810 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "S82065:7 X57616:-21 X57617:-21 X57618:-21 AB977851:28 AB977651:28 AB977825:30 DQ473378:31 DQ473379:31 DQ473384:31 DQ473388:31 AB977983:36 AB305990:-41 AB977578:-68 M13856:91 KX076483:92 KX076348:95 KX075549:100 KX076278:100 MG192843:103 MG193115:103 MG192620:103 MG192778:103 MG192820:103 MG192935:103 MG193117:103 MG193113:103 MG192918:103 MG192990:103 AF428128:103 MG192897:103 AF428129:103 AF428126:103 MG789114:103 MG789197:103 MG789264:103 MG789535:103 MG789565:103 MG789625:103 MG789654:103 MG790034:103 MG790047:103 MG790778:103 KM004232:103 EU340842:103 AY123173:103 AY123179:103 AY123182:103 AY123185:103 MG192709:103 MG192767:103 MG192821:103 MG192939:103 MG192686:103 AY123172:103 AY123178:103 AY123181:103 AY123184:103 MG192552:103 MG192708:103 MG192837:103 MG192851:103 MG192978:103 MG193105:103 AY123186:103 MG192667:103 MG192817:103 MG192735:103 MG192934:103 MG192975:103 MG193009:103 MG193072:103 MG193091:103 MG789081:103 MG789096:103 MG789103:103 MG789296:103 MG789344:103 MG789384:103 MG789433:103 MG789611:103 MG789798:103 MG789869:103 MG790116:103 MG790253:103 MG790409:103 MG790504:103 MG790979:103 KM004036:103 KM004228:103 KM004692:103 AY292265:103 AY292266:103 MK088556:103 AY190092:106 AY190098:107 KX074565:109 KX074893:109 KX075900:109 KX076646:109 KX076149:109 KX076045:109 KX076074:109 KX074314:109 KX076217:109 KX076372:109 KX075161:109 KX075750:109 KX076349:109 KX076351:109 KX076354:109 KX076376:109 KX077046:109 KX074437:109 KX074579:109 KX074720:109 KX075318:109 KX076170:109 HM236761:109 GQ502886:109 KX075139:110 KX075575:110 HM236505:112 AY751922:112 HM236582:112 HM236567:115 HM236706:115 HM236506:118 L34729:118 L34726:121 U39140:121 HM236556:124 HM236719:124 KX076153:127 U39133:133 AB978015:136 KX076936:136 AF037567:143 KX074993:147 KX075673:147 KX074878:147 KX074527:147 KX074873:147 KX076347:147 AF045810:148 AJ305359:148 X62856:-217 AB978075:-217 D13083:-230 L06888:-239 AB305935:-243 X58812:-254 AB305807:-254 AB977853:-269 AB977557:-269 AB977820:-269 AB305853:-269 AB977753:-269 AB977910:-269 U47744:-275 AB305937:-313 U47743:-335 AB305887:-348 X58811:-349 AB306255:-349 LP896468:-350 AB305961:-350 AB977888:-351" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.